species:   Rhsol
pid:       PID0569
parent:    Rhi-milR-107
paralog:   
locus:     KB317737.1:56848-56919
matures:   ['UAGGCUACUUGGACCACCUGGAG', 'CCAGUCUGUCACGAGUUGCGCUUUG']
srr:       SRR1994872
genome:    /Users/jax/+Genomes/Fungal_genomes/Rhsol.AFRT00000000.1_scaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994872.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994872.cram KB317737.1:56848-56919

8 out of bounds
24 alignments
9 proper strand
8 stranded perfect matches

        **************************  ****************************        
GUUGCGUUCAUAGGCUACUUGGACCACCUGGAGGCUUGCCCAGUCUGUCACGAGUUGCGCUUUGACUCGGCU
((((.((.((.((((.((((((((...((((........))))...))).))))).)).)).)))).)))).
----------UAGGCUACUUGGACCACCUGGAG--------------------------------------- l=23 a=0 c
---------------------------------------CCAGUCUGUCACGAGUUGCGCUUUG-------- l=25 a=0 c*
----------UAGGCUACUUGGACCACCUGGAGG-------------------------------------- l=24 a=4 ma
--------------------------------------CCCAGUCUGUCACGAGUUGCGCUUUG-------- l=26 a=0 ma*

----------UAGGCUACUUGGACCACCUGGAGG-------------------------------------- l=24 a=4 (ma)
----------UAGGCUACUUGGACCACCUGGAGGC------------------------------------- l=25 a=3 
-----------AGGCUACUUGGACCACCUGGAGGC------------------------------------- l=24 a=1 
-----------------------------------------------UCACGAGUUGCGCUUUGACa----- l=20 a=1 

mb-01011
ax-1001011
ku-01
ss-111110001100
fn-101
